Figure 2
From: Genome-wide association Scan of dental caries in the permanent dentition
Regional plots of P-values at top loci in meta-analyses. Negative log10 transformed P-values and physical positions for SNPs in the region are shown. Colors indicate linkage disequilibrium between the index SNP (colored in purple) and other SNPs based on HapMap CEU data. The rug plot indicates regional SNP density. The recombination rate overlay is based on HapMap CEU data. Gene positions and directions of transcription are annotated based on hg19/1000 Genomes Nov 2010 release.