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Table 6 Prevalence (present, absent) for each of 267 bacterial species identified, overall and by age categories

From: Composition and diversity of the subgingival microbiome and its relationship with age in postmenopausal women: an epidemiologic investigation

Rank Ordera

OTU Label

 

Age categories (years)

Overall

(N = 1219)

50–59

(N = 239)

60–69

(N = 554)

≥70

(N = 426)

%

%

%

%

1

Streptococcus oralis

100

100

100

100

1

Veillonella dispar

100

100

100

100

1

Veillonella parvula

100

100

100

100

4

Selenomonas sputigena

99.8

99.6

99.8

99.8

5

Fusobacterium nucleatum_subsp._vincentii

99.6

99.6

99.6

99.5

6

Fusobacterium nucleatum_subsp._animalis

99.3

99.6

99.3

99.3

6

Granulicatella adiacens

99.3

99.2

99.5

99.3

8

Streptococcus sanguinis

99.3

100

99.3

99.1

9

Rothia dentocariosa

99.2

99.2

99.3

99.1

10

Campylobacter gracilis

99.1

99.6

98.9

99.1

11

Selenomonas noxia

99.0

98.7

99.1

99.1

11

Streptococcus gordonii

99.0

98.7

98.9

99.3

13

Fusobacterium nucleatum_subsp._polymorphum

98.6

99.2

98.9

97.9

14

Fusobacterium sp._oral_taxon_203

98.4

98.7

98.0

98.8

14

Streptococcus cristatus

98.4

98.7

98.2

98.6

14

Fusobacterium naviforme

98.4

99.2

98.6

97.7

17

Actinomyces naeslundii

98.0

97.9

98.2

97.9

18

Corynebacterium matruchotii

97.5

96.7

97.3

98.1

19

Prevotella oris

97.2

97.5

97.3

96.9

20

Actinomyces oris

97.1

97.5

96.9

97.2

21

Streptococcus salivarius

97.0

96.7

96.8

97.7

21

Parvimonas micra

97.0

95.8

96.9

97.7

23

Haemophilus parainfluenzae

96.9

98.7

97.3

95.3

24

Streptococcus intermedius

96.8

97.9

95.5

97.9

25

Veillonella atypica

96.4

95.0

95.7

98.1

26

Rothia mucilaginosa

96.1

96.2

96.2

96.0

27

Dialister invisus

95.4

95.8

94.6

96.2

28

Campylobacter concisus

95.2

95.8

94.8

95.3

29

Capnocytophaga gingivalis

94.9

95.8

94.9

94.4

29

TM7_[G-1] sp._oral_taxon_346

94.9

95.0

96.0

93.4

31

Prevotella nigrescens

94.2

95.0

94.2

93.7

32

Kingella oralis

93.0

92.9

94.2

91.5

33

Bergeyella sp._oral_taxon_322

92.7

92.9

91.9

93.7

34

Gemella haemolysans

92.5

91.6

94.2

90.8

35

Actinomyces sp._oral_taxon_169

92.3

93.7

93.0

90.6

36

Actinomyces sp._oral_taxon_180

92.1

94.1

92.2

90.8

36

Eikenella corrodens

92.1

95.4

92.6

89.7

38

Prevotella melaninogenica

91.6

92.1

90.6

92.7

38

TM7_[G-1] sp._oral_taxon_349

91.6

92.9

92.4

89.7

40

Campylobacter showae

91.3

91.6

91.0

91.5

41

Actinomyces johnsonii

91.1

91.6

91.7

90.1

42

Capnocytophaga granulosa

90.8

89.5

92.4

89.4

43

Selenomonas sp._oral_taxon_136

90.7

89.1

90.4

92.0

44

Bacteroidales_[G-2] sp._oral_taxon_274

90.4

88.3

91.5

90.1

45

Selenomonas artemidis

90.3

90.4

90.4

90.1

46

Capnocytophaga leadbetteri

90.2

90.0

91.7

88.5

46

Actinomyces massiliensis

90.2

92.1

91.3

87.6

48

Fretibacterium sp._oral_taxon_360

90.0

91.2

90.4

88.7

49

Gemella morbillorum

89.8

89.5

90.3

89.4

50

Streptococcus sp._oral_taxon_074

89.3

87.0

91.0

88.3

51

Rothia aeria

89.2

90.0

91.9

85.2

52

Treponema socranskii

88.8

88.7

88.4

89.4

53

Leptotrichia hongkongensis

88.7

85.4

89.2

89.9

54

Streptococcus mutans

88.4

84.9

88.1

90.8

54

Cardiobacterium hominis

88.4

91.6

89.2

85.4

54

TM7_[G-1] sp._oral_taxon_952

88.4

90.0

90.3

85.0

57

Actinomyces gerencseriae

87.9

84.9

87.0

90.6

58

Leptotrichia wadei

87.7

86.6

87.0

89.2

59

Anaeroglobus geminatus

87.6

89.1

86.5

88.3

60

Streptococcus parasanguinis_II

87.4

87.4

84.3

91.5

61

Alloprevotella tannerae

87.3

90.0

85.6

88.0

62

Actinomyces sp._oral_taxon_171

87.2

88.7

87.4

86.2

62

Capnocytophaga sputigena

87.2

88.7

89.0

84.0

64

Fusobacterium nucleatum_subsp._nucleatum

86.8

90.8

86.5

85.0

65

Catonella morbi

86.6

87.0

87.2

85.7

66

Corynebacterium durum

85.6

88.7

86.8

82.2

66

Selenomonas infelix

85.6

88.7

85.6

83.8

68

Prevotella denticola

85.5

82.8

84.7

88.0

69

Prevotella sp._oral_taxon_317

85.2

88.3

83.6

85.4

70

Leptotrichia sp._oral_taxon_212

84.8

87.4

87.0

80.5

71

Porphyromonas sp._oral_taxon_279

84.5

83.7

85.7

83.3

72

Neisseria sicca

83.5

80.8

86.3

81.5

73

Gemella sanguinis

83.1

85.4

80.9

84.7

74

Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brac

83.0

87.4

82.5

81.2

75

Tannerella forsythia

82.9

82.0

83.8

82.4

75

Neisseria flavescens

82.9

77.8

85.4

82.4

77

Prevotella sp._oral_taxon_300

82.5

80.8

81.4

85.0

78

Prevotella maculosa

82.3

80.8

81.4

84.3

79

Neisseria elongata

82.2

80.3

84.1

80.8

80

Selenomonas flueggei

82.0

79.9

82.9

81.9

81

Selenomonas sp._oral_taxon_892

81.8

85.4

83.6

77.5

82

Actinomyces israelii

81.7

79.9

80.9

83.8

83

Oribacterium sp._oral_taxon_078

81.4

78.2

80.1

84.7

84

Lachnoanaerobaculum saburreum

81.3

78.7

82.5

81.2

85

Megasphaera micronuciformis

81.1

79.1

78.5

85.4

85

Prevotella salivae

81.1

73.2

80.9

85.7

87

Streptococcus parasanguinis_I

80.6

80.3

78.2

84.0

88

Cardiobacterium valvarum

80.5

81.2

82.1

77.9

89

Prevotella oulorum

80.1

82.8

77.6

81.9

89

Veillonellaceae_[G-1] sp._oral_taxon_150

80.1

78.2

79.1

82.4

91

Leptotrichia sp._oral_taxon_417

79.7

74.5

80.3

81.7

92

Veillonella rogosae

79.6

82.4

82.7

73.9

93

Streptococcus anginosus

79.5

81.2

78.0

80.5

94

Veillonellaceae_[G-1] sp._oral_taxon_155

79.4

77.4

77.8

82.6

95

Fretibacterium fastidiosum

79.2

79.1

80.1

78.2

96

Lautropia mirabilis

78.2

82.8

78.9

74.6

97

Actinobaculum sp._oral_taxon_183

78.0

78.7

78.3

77.2

98

Fusobacterium periodonticum

77.7

74.9

82.1

73.5

99

Selenomonas sp._oral_taxon_919

77.2

84.1

75.6

75.4

100

Selenomonas sp._oral_taxon_137

76.8

80.3

76.9

74.6

101

Atopobium parvulum

76.5

76.2

73.8

80.3

101

Streptococcus lactarius

76.5

80.3

75.1

76.1

103

Kingella denitrificans

76.3

72.0

76.0

79.1

104

Capnocytophaga sp._oral_taxon_336

75.1

77.4

75.5

73.5

105

Lachnospiraceae_[G-3] sp._oral_taxon_100

73.7

77.0

73.6

72.1

106

Atopobium rimae

73.3

72.4

73.1

74.2

107

Streptococcus constellatus

73.0

72.8

71.7

74.9

108

Tannerella sp._oral_taxon_286

72.8

69.9

74.9

71.8

108

Selenomonas sp._oral_taxon_134

72.8

75.7

72.9

70.9

110

Leptotrichia buccalis

72.0

64.9

76.0

70.9

111

Selenomonas sp._oral_taxon_146

71.9

73.2

72.9

69.7

112

Leptotrichia sp._oral_taxon_215

71.8

75.3

72.4

69.0

113

Leptotrichia sp._oral_taxon_392

71.4

74.5

74.9

65.0

114

TM7_[G-5] sp._oral_taxon_356

71.2

74.5

72.2

68.1

115

Dialister pneumosintes

70.6

74.1

70.2

69.2

115

Prevotella sp._oral_taxon_472

70.6

71.5

75.3

64.1

117

Streptococcus sp._oral_taxon_056

70.6

69.0

73.3

68.1

118

Fretibacterium sp._oral_taxon_359

70.5

66.9

71.1

71.6

119

Solobacterium moorei

70.4

69.0

70.0

71.6

120

Abiotrophia defectiva

70.1

69.9

72.9

66.7

121

Lachnoanaerobaculum umeaense

69.3

69.9

70.2

67.8

122

Parvimonas sp._oral_taxon_393

69.2

69.9

70.2

67.4

123

Actinomyces meyeri

67.8

71.1

69.7

63.4

124

Centipeda periodontii

67.7

64.0

69.1

67.8

125

Leptotrichia shahii

67.6

72.4

66.6

66.2

126

Olsenella sp._oral_taxon_807

66.9

61.9

67.1

69.2

127

Actinobaculum sp._oral_taxon_848

66.3

64.9

66.1

67.4

128

Leptotrichia hofstadii

66.0

63.6

68.2

64.6

128

Neisseria oralis

66.0

66.1

69.0

62.2

128

Prevotella histicola

66.0

62.3

62.8

72.1

131

Actinomyces sp._oral_taxon_178

65.8

61.1

65.3

69.0

132

Stomatobaculum longum

65.7

62.3

63.7

70.2

132

TM7_[G-1] sp._oral_taxon_352

65.7

60.3

70.6

62.4

134

Capnocytophaga sp._oral_taxon_326

65.4

64.4

68.1

62.4

135

Prevotella oralis

64.5

63.6

65.2

64.1

136

Streptococcus sinensis

63.9

65.7

62.1

65.3

137

Alloprevotella sp._oral_taxon_308

63.5

68.6

61.9

62.7

138

Porphyromonas sp._oral_taxon_284

63.3

64.4

66.8

58.2

138

Prevotella pallens

63.3

63.2

61.7

65.5

140

Aggregatibacter sp._oral_taxon_458

63.2

65.7

65.3

58.9

141

Porphyromonas endodontalis

63.1

69.5

63.7

58.7

142

Prevotella saccharolytica

63.0

65.3

65.0

59.2

143

Selenomonas sp._oral_taxon_126

62.0

62.3

63.4

60.1

144

Lachnoanaerobaculum orale

61.1

63.2

58.5

63.4

145

Treponema maltophilum

61.0

59.0

62.3

60.3

146

Peptostreptococcaceae_[XI][G-7] [Eubacterium]_yuri

60.2

64.0

62.3

55.4

147

Veillonella denticariosi

60.1

56.5

60.8

61.3

148

Sphingomonas echinoides

59.8

64.9

61.7

54.5

149

Streptococcus australis

59.7

57.3

59.0

62.0

150

TM7_[G-1] sp._oral_taxon_348

59.6

57.7

63.4

55.9

151

TM7_[G-1] sp._oral_taxon_488

57.8

56.9

61.2

54.0

152

Ruminococcaceae_[G-1] sp._oral_taxon_075

56.9

58.2

59.7

52.6

153

Selenomonas sp._oral_taxon_936

56.8

58.2

56.3

56.8

154

Prevotella buccae

56.7

49.4

54.7

63.4

155

Leptotrichia sp._oral_taxon_225

56.4

60.3

58.7

51.4

155

Prevotella pleuritidis

56.4

55.2

59.4

53.3

157

Alloprevotella rava

56.2

57.7

56.9

54.5

158

Aggregatibacter aphrophilus

56.1

57.7

59.6

50.7

159

Treponema denticola

56.0

59.4

58.1

51.4

160

Peptostreptococcus stomatis

55.9

64.0

55.1

52.3

161

Pseudomonas fluorescens

55.5

53.6

57.0

54.5

162

Actinomyces sp._oral_taxon_170

55.2

60.3

57.0

50.0

163

Porphyromonas gingivalis

55.1

51.0

56.3

55.9

164

Haemophilus sp._oral_taxon_036

55.0

59.4

54.7

52.8

165

Johnsonella ignava

54.6

54.0

56.3

52.8

166

Porphyromonas catoniae

54.4

57.7

56.5

49.8

167

Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infi

54.2

47.3

54.7

57.5

168

Prevotella sp._oral_taxon_292

53.8

49.4

54.3

55.6

169

Fretibacterium sp._oral_taxon_362

53.6

53.6

53.8

53.3

170

TM7_[G-1] sp._oral_taxon_347

53.2

58.2

54.3

49.1

171

Leptotrichia sp._oral_taxon_219

52.7

49.4

54.2

52.6

172

Aggregatibacter segnis

52.1

56.1

54.9

46.2

173

TM7_[G-3] sp._oral_taxon_351

51.9

45.6

55.4

50.9

174

Fusobacterium sp._oral_taxon_370

51.1

45.6

55.6

48.4

175

Prevotella sp._oral_taxon_313

50.5

53.1

46.4

54.2

176

Prevotella loescheii

50.4

52.3

54.5

43.9

177

Desulfobulbus sp._oral_taxon_041

50.3

48.1

50.9

50.7

178

Capnocytophaga sp._oral_taxon_864

49.1

51.9

52.0

43.9

179

Ottowia sp._oral_taxon_894

48.4

49.4

50.2

45.5

180

Microbacterium flavescens

48.0

50.2

49.5

44.8

181

Leptotrichia sp._oral_taxon_498

47.8

42.3

48.2

50.5

182

Granulicatella elegans

47.3

52.7

45.5

46.5

183

Filifactor alocis

46.8

50.2

46.8

44.8

184

Campylobacter curvus

46.2

45.6

46.4

46.2

185

Mycoplasma salivarium

45.0

47.7

45.3

43.2

186

Capnocytophaga sp._oral_taxon_338

44.8

42.7

44.4

46.5

187

Capnocytophaga sp._oral_taxon_902

44.3

43.1

46.6

42.0

188

Treponema sp._oral_taxon_231

43.6

51.5

45.3

37.1

189

Tannerella sp._oral_taxon_808

43.1

39.3

45.7

41.8

190

Prevotella intermedia

42.8

40.2

43.3

43.7

191

TM7_[G-6] sp._oral_taxon_870

42.7

43.9

44.2

39.9

192

Mitsuokella sp._oral_taxon_131

42.2

35.6

41.0

47.7

193

Haemophilus haemolyticus

42.0

47.3

41.3

39.9

194

Prevotella veroralis

41.7

44.4

40.8

41.3

195

Veillonellaceae_[G-1] sp._oral_taxon_129

40.9

37.7

40.8

43.0

195

Aggregatibacter paraphrophilus

40.9

45.2

42.2

36.6

197

Pseudoramibacter alactolyticus

40.9

33.5

41.5

44.1

198

Bergeyella sp._oral_taxon_907

40.6

39.7

42.8

38.3

199

Bifidobacterium dentium

40.5

33.9

37.9

47.7

199

TM7_[G-1] sp._oral_taxon_869

40.5

41.8

41.5

38.5

201

Prevotella sp._oral_taxon_306

40.3

36.0

39.5

43.7

202

Prevotella dentalis

39.3

40.2

36.5

42.5

203

Shuttleworthia satelles

39.2

34.7

37.5

43.9

204

Veillonella sp._oral_taxon_780

39.1

40.6

42.4

34.0

205

Capnocytophaga sp._oral_taxon_412

38.7

38.9

41.5

35.0

206

Neisseria subflava

38.6

39.3

37.4

39.7

206

Scardovia wiggsiae

38.6

37.2

37.7

40.4

208

Leptotrichia sp._oral_taxon_223

37.8

42.3

36.5

37.1

209

Peptostreptococcaceae_[XI][G-6] [Eubacterium]_noda

37.2

35.6

37.0

38.5

209

Selenomonas sp._oral_taxon_937

37.2

36.4

35.2

40.1

211

Bacteroidetes_[G-5] sp._oral_taxon_511

36.8

41.0

37.2

33.8

212

Capnocytophaga sp._oral_taxon_323

36.7

36.0

37.4

36.2

213

Selenomonas sp._oral_taxon_149

36.4

30.5

33.8

43.2

213

Selenomonas sp._oral_taxon_442

36.4

30.1

37.5

38.5

215

SR1_[G-1] sp._oral_taxon_874

36.3

39.3

40.3

29.6

216

Porphyromonas sp._oral_taxon_275

36.0

36.4

37.7

33.6

217

Selenomonas sp._oral_taxon_478

35.9

31.4

38.4

35.2

218

Alloprevotella sp._oral_taxon_473

35.8

39.7

36.8

32.4

219

Neisseria bacilliformis

35.5

35.1

35.4

35.9

220

Capnocytophaga sp._oral_taxon_324

35.4

32.6

38.1

33.3

221

Veillonellaceae_[G-1] sp._oral_taxon_145

35.2

35.1

36.1

34.0

222

Atopobium sp._oral_taxon_199

34.9

36.0

36.1

32.6

223

Lachnospiraceae_[G-8] sp._oral_taxon_500

34.8

33.1

35.7

34.5

224

TM7_[G-2] sp._oral_taxon_350

34.6

34.7

34.7

34.5

225

Bacteroidaceae_[G-1] sp._oral_taxon_272

33.1

26.8

33.9

35.7

225

Capnocytophaga sp._oral_taxon_903

33.1

31.8

36.1

30.0

225

Selenomonas dianae

33.1

28.9

35.0

32.9

228

Prevotella baroniae

33.0

32.2

33.4

32.9

229

Leptotrichia goodfellowii

32.2

37.2

34.1

27.0

230

Prevotella micans

31.4

29.3

32.7

31.0

231

Porphyromonas sp._oral_taxon_278

31.0

31.8

31.9

29.3

232

Prevotella sp._oral_taxon_314

30.8

30.1

31.4

30.5

233

Haemophilus parahaemolyticus

30.3

37.2

31.8

24.4

234

Anaerolineae_[G-1] sp._oral_taxon_439

30.2

25.5

30.0

33.1

235

Selenomonas sp._oral_taxon_133

30.1

28.9

30.5

30.3

236

Treponema lecithinolyticum

29.5

30.1

31.2

26.8

237

Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saph

28.3

22.2

31.4

27.7

238

Treponema sp._oral_taxon_237

27.0

32.2

28.9

21.6

239

Neisseria pharyngis

25.8

25.1

25.5

26.8

240

Leptotrichia sp._oral_taxon_879

25.4

25.9

25.6

24.9

241

Brevundimonas diminuta

25.3

27.6

25.8

23.2

242

Bradyrhizobium elkanii

24.9

26.4

22.7

26.8

242

Capnocytophaga sp._oral_taxon_332

24.9

29.7

26.2

20.4

244

Megasphaera sp._oral_taxon_123

24.5

32.2

24.2

20.7

245

Capnocytophaga sp._oral_taxon_380

22.2

20.5

24.9

19.7

246

Treponema vincentii

22.0

23.0

23.5

19.5

247

Prevotella sp._oral_taxon_376

21.4

26.8

23.5

15.7

248

Prevotella sp._oral_taxon_526

21.1

21.8

21.7

20.0

249

Aggregatibacter sp._oral_taxon_513

20.2

21.8

23.1

15.5

250

Lactobacillus gasseri

19.9

18.0

17.9

23.7

251

Fretibacterium sp._oral_taxon_358

19.3

16.7

19.3

20.7

252

Mitsuokella sp._oral_taxon_521

18.7

18.4

19.9

17.4

253

Fretibacterium sp._oral_taxon_361

18.5

15.5

19.1

19.2

254

Prevotella sp._oral_taxon_475

18.2

19.2

20.0

15.3

255

Treponema medium

18.1

16.3

19.5

17.4

256

Johnsonella sp._oral_taxon_166

16.7

12.6

18.6

16.7

257

Streptococcus sobrinus

15.9

13.8

14.4

19.0

258

Prevotella multiformis

15.5

16.3

15.5

15.0

259

Butyrivibrio sp._oral_taxon_080

14.5

15.1

15.9

12.4

260

GN02_[G-2] sp._oral_taxon_873

13.7

10.9

15.0

13.6

261

Aggregatibacter actinomycetemcomitans

12.3

12.1

11.4

13.6

262

Leptothrix sp._oral_taxon_025

10.9

13.4

11.4

8.9

263

Atopobium sp._oral_taxon_416

8.7

5.4

8.5

10.8

264

Sphingomonas sp._oral_taxon_006

7.2

5.9

7.9

7.0

265

Porphyrobacter tepidarius

6.9

7.1

6.1

7.7

266

Treponema sp._oral_taxon_247

4.8

6.3

4.5

4.2

267

Pyramidobacter piscolens

4.0

2.9

3.8

4.9

  1. aBacteria in the table are rank ordered according to their prevalence in the overall cohort
  2. Dashed line inserted below top 20 taxa