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Table 4 Protein interaction network found in the GCF with an additional seven proteins in the Search Tools or the Retrieval of Interesting Proteins/Genes (STRING) analysis. A total of six pathways were found during orthodontic treatment

From: Label-free quantitative proteomic analysis of gingival crevicular fluid to identify potential early markers for root resorption

Pathway id

Pathway description

Observed Gene count

False discovery rate

Nodes colour

Associated proteins

GO:0048518

Positive regulation of biological process

16

4.31E-05

Red

AGT, ANXA1, APOH, FGG, GAPDH, HBB, HRG, HSPA1A, IGHV3–11, IGJ, LDHA, MMP9, S100A8, S100A9, TMSB4X, VTN

GO:0050896

Response to stimulus

19

1.10E-05

Dark green

AGT, ANXA1, APOD, APOH, AZGP1, FGG, GAPDH, HBB, HRG, HSPA1A, IGHV3–11, IGJ, LDHA, MMP9, S100A8, S100A9, TMSB4X, TYMP, VTN

GO:0008152

Metabolic process

16

0.0178

Purple

AGT, AMBP, ANXA1, APOD, APOH, AZGP1, FGG, GAPDH, HBB, HSPA1A, IGHV3–11, LDHA, MMP9, S100A8, S100A9, TYMP

GO:0009987

Cellular process

20

0.0134

Dark blue

AGT, AMBP, ANXA1, APOD, APOH, AZGP1, FGG, GAPDH, HBB, HRG, HSPA1A, IGHV3–11, IGJ, LDHA, MMP9, S100A8, S100A9, TMSB4X, TYMP, VTN

GO:0002376

Immune system process

12

1.42E-05

Light green

ANXA1, FGG, GAPDH, HBB, HRG, HSPA1A, IGHV3–11, IGJ, MMP9, S100A8, S100A9, VTN

GO:0032879

Regulation of localization

13

4.39E-06

Yellow

AGT, ANXA1, APOD, APOH, FGG, GAPDH, HRG, HSPA1A, MMP9, S100A8, S100A9, TMSB4X, VTN