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Table 1 Specific oligonucleotides used in this study

From: Salivary Porphyromonas gingivalis predicts outcome in oral squamous cell carcinomas: a cohort study

Primer

Sequence (5′-3′)

Annealing temperature (°C)

References

Universal primers

F: TCCTACGGGAGGCAGCAGT

60

[20]

R: GGACTACCAGGGTATCTAATCCTGTT

Pg

F: ACCTTACCCGGGATTGAAATG

58

[20]

R: CAACCATGCAGCACCTACATAGAA

fimA I

F: CTGTGTGTTTATGGCAAACTTC

58

[21]

R: AACCCCGCTCCCTGTATTCCGA

fimA Ib

F: CAGCAGAGCCAAAAACAATCG

58

[14]

R: TGTCAGATAATTAGCGTCTGC

fimA II

F: GCATGATGGTACTCCTTTGA

58

[22]

R: CTGACCAACGAGAACCCACT

fimA III

F: ATTACACCTACACAGGTGAGGC

58

[21]

R: AACCCCGCTCCCTGTATTCCGA

fimA IV

F: CTATTCAGGTGCTATTACCCAA

58

[21]

R: AACCCCGCTCCCTGTATTCCGA

fimA V

F: AACAACAGTCTCCTTGACAGTG

58

[14]

R: TATTGGGGGTCGAACGTTACTGTC

Pg probe used in ISH

CAATACTCGTATCGCCCGTTATTC-Digoxin

 

[3]

  1. Pg: Porphyromonas gingivalis. ISH: In situ hybridization