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Table 2 Effect of probing depth and RA on alpha diversity of subgingival microbiome

From: Subgingival microbiome of deep and shallow periodontal sitesĀ in patients with rheumatoid arthritis: a pilot study

Ā 

Observed OTUs

Faithā€™s phylogenetic diversity

Shannon diversity

Probing depth

(ref: shallow)

26.50ā€‰Ā±ā€‰14.41SE,

pā€‰=ā€‰0.087

1.93ā€‰Ā±ā€‰0.73SE,

pā€‰=ā€‰0.022

āˆ’Ā 0.09ā€‰Ā±ā€‰0.28SE,

pā€‰=ā€‰0.749

RA status

(ref: control)

8.45ā€‰Ā±ā€‰22.01SE,

pā€‰=ā€‰0.704

0.60ā€‰Ā±ā€‰1.10SE,

pā€‰=ā€‰0.688

āˆ’Ā 0.28ā€‰Ā±ā€‰0.40SE,

pā€‰=ā€‰0.482

Probe depthĀ Ć— RA status

āˆ’Ā 18.20ā€‰Ā±ā€‰23.08SE,

pā€‰=ā€‰0.443

āˆ’Ā 1.08ā€‰Ā±ā€‰1.20SE,

pā€‰=ā€‰0.384

0.52ā€‰Ā±ā€‰0.45SE,

pā€‰=ā€‰0.275

  1. Mixed linear models were used to examine the influence of probing depth (deep vs. shallow), RA status, and the interaction of the two conditions on three different alpha diversity metrics: observed OTUs, Faithā€™s phylogenetic diversity, and Shannon diversity. Subject identity was included as a random effect. Model coefficient estimates, the standard error (SE) of the estimates, and p values are shown. OTUs: operational taxonomic units