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Table 2 Nucleotide sequence variations in the EBER region of 10 samples with OIF, OLP, and OSCC

From: Detection of Epstein-Barr virus encoded small RNA genes in oral squamous cell carcinoma and non-cancerous oral cavity samples

           

Intergenic Region (6796–6955)

 

EBER-2 (6956–7128)

Oral Lesions

Position

6808

6834

6870

6884

6886

6911

6927

6944

6981

7085

7094

7123

 

EBV-WT (Reference)

T

C

C

G

T

A

G

G

C

C

C

A

 

AG876

A

–

–

A

G

G

A

A

–

–

–

G

OIF

MN921213.1

–

T

T

–

–

–

–

–

–

T

T

–

OIF

MN921212.1

–

T

–

–

–

–

–

–

–

G

–

–

OLP

MN921219.1

–

–

–

–

–

–

–

–

–

–

–

–

OLP

MN921220.1

–

–

–

–

–

–

–

–

T

T

T

–

OLP

MN921221.1

–

T

–

–

–

–

–

–

–

G

–

–

OSCC

MN921214.1

–

T

–

–

–

–

–

–

–

G

–

–

OSCC

MN921216.1

–

–

–

–

–

–

–

–

–

–

–

–

OSCC

MN921217.1

–

––

–

–

–

–

–

–

–

–

–

–

OSCC

MN921218.1

–

–

–

–

–

–

–

–

–

–

–

–

OSCC

MN921215.1

–

–

–

–

–

–

–

–

–

–

–

–

  1. Only nucleotides different from EBV-WT are indicated. The changes in coding region of EBER2 and non-coding region between EBER1 and EBER2 are separated by dark line and the positions are shown in the top. The nucleotide positions of identified changes are indicated vertically across the top. The absence of variations is showed with dashes. Previously published sequence of AG876 was taken from Lin et al. [28] and Dolan et al. [54]