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Table 1 Differential abundance of Species between different groups

From: Microbiological findings in early and late implant loss: an observational clinical case-controlled study

Species name

FDR

Abund L

Abund E

Effect

Pseudomonas sp

0.0070

1.86

6.50

− 1.18

Anaerovoracaceae uncl

0.0240

8.82

4.07

0.94

Desulfobulbus sp

0.0142

8.82

− 0.44

1.15

Pseudoramibacter alactolyticus

0.0079

7.23

− 0.37

1.21

Treponema sp

0.0151

10.48

1.62

1.04

Pantoea sp

0.0064

2.69

7.89

− 1.13

Fretibacterium sp

0.0170

9.21

2.00

1.02

Shewanella sp

0.0078

2.75

7.55

− 1.09

Species name

FDR

Abund L

Abund CL

Effect

Rothia sp

0.0187

2.41

10.56

− 1.06

Streptococcus sp

0.0063

9.20

12.48

− 1.52

Desulfobulbus sp

0.0209

8.79

− 1.74

1.73

Pseudoramibacter alactolyticus

0.0256

7.18

− 1.40

2.10

Fretibacterium sp

0.0555

9.18

− 0.55

1.55

Haemophilus parainfluenzae

0.0015

2.36

8.62

− 1.65

Haemophilus sp

0.0035

2.63

9.32

− 1.52

Dialister pneumosintes

0.0333

4.93

− 1.98

1.43

Capnocytophaga sp

0.0930

2.14

7.00

− 0.94

Granulicatella sp

0.0299

− 0.09

5.87

− 1.12

Species name

FDR

Abund E

Abund CE

Effect

Streptococcus sanguinis

0.0061

3.69

9.99

− 1.40

Lautropia mirabilis

0.0539

1.60

7.90

− 1.00

Actinomyces naeslundii

0.0961

0.43

6.26

− 0.84

  1. abund X: relative abundance of species in group X (clr transformed)
  2. FDR: False discovera rate (Benjamini Hochberg corrected P value, Welch-test)
  3. effect: ratio of median between-group differences and within-group differences
  4. uncl.: indicates that this taxon was not classified on a lower rank