Table 2 Differentially abundant OTUs identified using DESeq2 at the alpha = 0.05 level between males and females as the main effect and differentially abundant OTUs identified using DESeq2 in high vs. low dental caries status (alpha = 0.1 level). The taxonomic information of each identified OTU, estimated log2 fold change (LFC), and adjusted p-value using the FDR approach (p value adjusted) are reported
From: Oral microbiota analyses of paediatric Saudi population reveals signatures of dental caries
Status | Phylum | Class | Order | family | Genus | LFC | P value adjusted |
|---|---|---|---|---|---|---|---|
Males versus females | Proteobacteria | Gammaproteobacteria | Burkholderiales | Neisseriaceae | Kingella | -0.533 | 0.037 |
Firmicutes | Clostridia | Lachnospirales | Lachnospiraceae | Stomatobaculum | 0.565 | 0.005 | |
Firmicutes | Bacilli | Lactobacillales | Carnobacteriaceae | Granulicatella | -0.245 | 0.037 | |
Proteobacteria | Gammaproteobacteria | Burkholderiales | Neisseriaceae | Unclassified Neisseriaceae | -0.856 | 0.008 | |
Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Moraxella | 0.059 | 0.005 | |
High versus low dental caries | Firmicutes | Negativicutes | Veillonellales-Selenomonadales | Selenomonadaceae | Uncultured | -0.001 | 0.071 |
Firmicutes | Negativicutes | Veillonellales-Selenomonadales | Veillonellaceae | Unclassified Veillonellaceae | 0.03 | 0.071 | |
Firmicutes | Clostridia | Lachnospirales | Lachnospiraceae | Oribacterium | -0.278 | 0.071 | |
Firmicutes | Bacilli | Lactobacillales | Unclassified Lactobacillales | Unclassified Lactobacillales | 0.409 | 0.076 |